IL_7AFA_007

3D structure

PDB id

7AFA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state F (head domain)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

GCU*G(2MG)C

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AFA_007 not in the Motif Atlas

Geometric match to IL_1KFO_002

Geometric discrepancy: 0.1544

The information below is about IL_1KFO_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

7AFA|1|1|G|1050
7AFA|1|1|C|1051
7AFA|1|1|U|1052
*
7AFA|1|1|G|1206
7AFA|1|1|2MG|1207
7AFA|1|1|C|1208

Current chains

Chain 1

16SrRNA (head domain of the 30S ribosome)

Nearby chains

Chain C

30S ribosomal protein S3

Chain N

30S ribosomal protein S14