IL_7AFI_022

3D structure

PDB id

7AFI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state C (body domain)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.53 Å

Loop

Sequence

GGAGG*CGUUAC

Length

11 nucleotides

Bulged bases

7AFI|1|A|U|485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AFI_022 not in the Motif Atlas

Homologous match to IL_5J7L_022

Geometric discrepancy: 0.1213

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

7AFI|1|A|G|446
7AFI|1|A|G|447
7AFI|1|A|A|448
7AFI|1|A|G|449
7AFI|1|A|G|450
*
7AFI|1|A|C|483
7AFI|1|A|G|484
7AFI|1|A|U|485
7AFI|1|A|U|486
7AFI|1|A|A|487
7AFI|1|A|C|488

Current chains

Chain A

16SrRNA

Nearby chains

Chain D

30S ribosomal protein S4

Chain P

30S ribosomal protein S16