IL_7AFI_049

3D structure

PDB id

7AFI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state C (body domain)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.53 Å

Loop

Sequence

CAC*GUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AFI_049 not in the Motif Atlas

Geometric match to IL_4V9F_076

Geometric discrepancy: 0.2959

The information below is about IL_4V9F_076

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_87316.1

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

12

Unit IDs

7AFI|1|A|C|1409
7AFI|1|A|A|1410
7AFI|1|A|C|1411
*
7AFI|1|A|G|1489
7AFI|1|A|U|1490
7AFI|1|A|G|1491

Current chains

Chain A

16SrRNA

Nearby chains

Chain X

Ribosome maturation factor RimP