IL_7AFL_040

3D structure

PDB id

7AFL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state D (multibody refinement for body domain of 30S ribosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CAU*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AFL_040 not in the Motif Atlas

Geometric match to IL_1L9A_004

Geometric discrepancy: 0.3846

The information below is about IL_1L9A_004

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_85599.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

9

Unit IDs

7AFL|1|A|C|1412
7AFL|1|A|A|1413
7AFL|1|A|U|1414
*
7AFL|1|A|G|1486
7AFL|1|A|G|1487
7AFL|1|A|G|1488

Current chains

Chain A

16SrRNA

Nearby chains

Chain L

30S ribosomal protein S12

Chain X

Ribosome maturation factor RimP