IL_7AFO_021

3D structure

PDB id

7AFO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state B (body domain)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.93 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AFO_021 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.136

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

7AFO|1|A|U|409
7AFO|1|A|G|410
7AFO|1|A|A|411
7AFO|1|A|A|412
7AFO|1|A|G|413
7AFO|1|A|A|414
7AFO|1|A|A|415
7AFO|1|A|G|416
*
7AFO|1|A|U|427
7AFO|1|A|G|428
7AFO|1|A|U|429
7AFO|1|A|A|430
7AFO|1|A|A|431
7AFO|1|A|A|432
7AFO|1|A|G|433

Current chains

Chain A

16SrRNA (body domain of the 30S ribosome)

Nearby chains

Chain D

30S ribosomal protein S4