IL_7AFO_023

3D structure

PDB id

7AFO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state B (body domain)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.93 Å

Loop

Sequence

GGAGG*CGUUAC

Length

11 nucleotides

Bulged bases

7AFO|1|A|U|485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AFO_023 not in the Motif Atlas

Geometric match to IL_5J7L_022

Geometric discrepancy: 0.1232

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

7AFO|1|A|G|446
7AFO|1|A|G|447
7AFO|1|A|A|448
7AFO|1|A|G|449
7AFO|1|A|G|450
*
7AFO|1|A|C|483
7AFO|1|A|G|484
7AFO|1|A|U|485
7AFO|1|A|U|486
7AFO|1|A|A|487
7AFO|1|A|C|488

Current chains

Chain A

16SrRNA (body domain of the 30S ribosome)

Nearby chains

Chain D

30S ribosomal protein S4

Chain P

30S ribosomal protein S16