3D structure

PDB id
7AFO (explore in PDB, NAKB, or RNA 3D Hub)
Description
Bacterial 30S ribosomal subunit assembly complex state B (body domain)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.93 Å

Loop

Sequence
GGAGG*CGUUAC
Length
11 nucleotides
Bulged bases
7AFO|1|A|U|485
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7AFO_023 not in the Motif Atlas
Geometric match to IL_5J7L_022
Geometric discrepancy: 0.1232
The information below is about IL_5J7L_022
Detailed Annotation
tSH-tHW-tWW
Broad Annotation
No text annotation
Motif group
IL_88269.4
Basepair signature
cWW-tWW-cSH-tWH-tHS-cWW
Number of instances in this motif group
3

Unit IDs

7AFO|1|A|G|446
7AFO|1|A|G|447
7AFO|1|A|A|448
7AFO|1|A|G|449
7AFO|1|A|G|450
*
7AFO|1|A|C|483
7AFO|1|A|G|484
7AFO|1|A|U|485
7AFO|1|A|U|486
7AFO|1|A|A|487
7AFO|1|A|C|488

Current chains

Chain A
16SrRNA (body domain of the 30S ribosome)

Nearby chains

Chain D
30S ribosomal protein S4
Chain P
30S ribosomal protein S16

Coloring options:


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