IL_7AFO_038
3D structure
- PDB id
- 7AFO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Bacterial 30S ribosomal subunit assembly complex state B (body domain)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.93 Å
Loop
- Sequence
- CAAAC*GGUAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7AFO_038 not in the Motif Atlas
- Homologous match to IL_4LFB_033
- Geometric discrepancy: 0.0875
- The information below is about IL_4LFB_033
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_05821.1
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 17
Unit IDs
7AFO|1|A|C|779
7AFO|1|A|A|780
7AFO|1|A|A|781
7AFO|1|A|A|782
7AFO|1|A|C|783
*
7AFO|1|A|G|799
7AFO|1|A|G|800
7AFO|1|A|U|801
7AFO|1|A|A|802
7AFO|1|A|G|803
Current chains
- Chain A
- 16SrRNA (body domain of the 30S ribosome)
Nearby chains
- Chain K
- 30S ribosomal protein S11
- Chain U
- 30S ribosomal protein S21
- Chain Y
- Ribosomal RNA small subunit methyltransferase A
Coloring options: