IL_7AS8_007

3D structure

PDB id

7AS8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis ribosome quality control complex state B. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AS8_007 not in the Motif Atlas

Geometric match to IL_7RQB_006

Geometric discrepancy: 0.0878

The information below is about IL_7RQB_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.7

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

7AS8|1|A|G|191
7AS8|1|A|G|192
7AS8|1|A|A|193
7AS8|1|A|A|194
7AS8|1|A|C|195
7AS8|1|A|U|196
7AS8|1|A|G|197
*
7AS8|1|A|C|204
7AS8|1|A|U|205
7AS8|1|A|A|206
7AS8|1|A|A|207
7AS8|1|A|G|208
7AS8|1|A|U|209
7AS8|1|A|A|210
7AS8|1|A|C|211

Current chains

Chain A

23S rRNA

Nearby chains

Chain P

50S ribosomal protein L15

Chain b

50S ribosomal protein L28