IL_7AS8_008

3D structure

PDB id

7AS8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis ribosome quality control complex state B. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUGAGUAG*CGAAACG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AS8_008 not in the Motif Atlas

Homologous match to IL_4WF9_009

Geometric discrepancy: 0.093

The information below is about IL_4WF9_009

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.1

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

7AS8|1|A|C|241
7AS8|1|A|U|242
7AS8|1|A|G|243
7AS8|1|A|A|244
7AS8|1|A|G|245
7AS8|1|A|U|246
7AS8|1|A|A|247
7AS8|1|A|G|248
*
7AS8|1|A|C|256
7AS8|1|A|G|257
7AS8|1|A|A|258
7AS8|1|A|A|259
7AS8|1|A|A|260
7AS8|1|A|C|261
7AS8|1|A|G|262

Current chains

Chain A

23S rRNA

Nearby chains

Chain P

50S ribosomal protein L15

Chain i

50S ribosomal protein L35