3D structure

PDB id
7AS8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Bacillus subtilis ribosome quality control complex state B. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabO
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
GCACU*AAAC
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7AS8_031 not in the Motif Atlas
Homologous match to IL_7RQB_029
Geometric discrepancy: 0.1058
The information below is about IL_7RQB_029
Detailed Annotation
C-loop with bulged stacked A's
Broad Annotation
C-loop
Motif group
IL_02509.1
Basepair signature
cWW-tSW-cWS-cSH-tWH-R-R-cWW
Number of instances in this motif group
5

Unit IDs

7AS8|1|A|G|911
7AS8|1|A|C|912
7AS8|1|A|A|913
7AS8|1|A|C|914
7AS8|1|A|U|915
*
7AS8|1|A|A|956
7AS8|1|A|A|957
7AS8|1|A|A|958
7AS8|1|A|C|959

Current chains

Chain A
23S rRNA

Nearby chains

Chain B
5S ribosomal RNA; 5S rRNA
Chain Q
50S ribosomal protein L16

Coloring options:


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