3D structure

PDB id
7AS8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Bacillus subtilis ribosome quality control complex state B. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabO
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
UUAAGUG*CUAAA
Length
12 nucleotides
Bulged bases
7AS8|1|A|A|1189
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7AS8_039 not in the Motif Atlas
Homologous match to IL_4WF9_039
Geometric discrepancy: 0.1123
The information below is about IL_4WF9_039
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_57188.5
Basepair signature
cWW-tWW-L-tWW-cWW-cSH
Number of instances in this motif group
5

Unit IDs

7AS8|1|A|U|1064
7AS8|1|A|U|1065
7AS8|1|A|A|1066
7AS8|1|A|A|1067
7AS8|1|A|G|1068
7AS8|1|A|U|1069
7AS8|1|A|G|1070
*
7AS8|1|A|C|1186
7AS8|1|A|U|1187
7AS8|1|A|A|1188
7AS8|1|A|A|1189
7AS8|1|A|A|1190

Current chains

Chain A
23S rRNA

Nearby chains

Chain I
50S ribosomal protein L6
Chain N
50S ribosomal protein L13
Chain j
50S ribosomal protein L36

Coloring options:


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