IL_7AS8_048

3D structure

PDB id

7AS8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis ribosome quality control complex state B. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAC*GAC

Length

6 nucleotides

Bulged bases

7AS8|1|A|A|1260

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AS8_048 not in the Motif Atlas

Homologous match to IL_4WF9_047

Geometric discrepancy: 0.1868

The information below is about IL_4WF9_047

Detailed Annotation

Intercalated cWW

Broad Annotation

Intercalated cWW

Motif group

IL_31737.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

7AS8|1|A|G|1259
7AS8|1|A|A|1260
7AS8|1|A|C|1261
*
7AS8|1|A|G|1268
7AS8|1|A|A|1269
7AS8|1|A|C|1270

Current chains

Chain A

23S rRNA

Nearby chains

Chain U

50S ribosomal protein L20

Chain V

50S ribosomal protein L21