IL_7AS8_072

3D structure

PDB id

7AS8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis ribosome quality control complex state B. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGCGAAG*CGAAGUAUA

Length

16 nucleotides

Bulged bases

7AS8|1|A|G|1830, 7AS8|1|A|A|1845, 7AS8|1|A|U|1849

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AS8_072 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.1138

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

7AS8|1|A|U|1827
7AS8|1|A|G|1828
7AS8|1|A|C|1829
7AS8|1|A|G|1830
7AS8|1|A|A|1831
7AS8|1|A|A|1832
7AS8|1|A|G|1833
*
7AS8|1|A|C|1842
7AS8|1|A|G|1843
7AS8|1|A|A|1844
7AS8|1|A|A|1845
7AS8|1|A|G|1846
7AS8|1|A|U|1847
7AS8|1|A|A|1848
7AS8|1|A|U|1849
7AS8|1|A|A|1850

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L2