3D structure

PDB id
7AS8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Bacillus subtilis ribosome quality control complex state B. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabO
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
AG*CCU
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7AS8_090 not in the Motif Atlas
Geometric match to IL_7RQB_091
Geometric discrepancy: 0.1091
The information below is about IL_7RQB_091
Detailed Annotation
Single stack bend
Broad Annotation
No text annotation
Motif group
IL_76488.4
Basepair signature
cWW-L-cWW
Number of instances in this motif group
36

Unit IDs

7AS8|1|A|A|2482
7AS8|1|A|G|2483
*
7AS8|1|A|C|2527
7AS8|1|A|C|2528
7AS8|1|A|U|2529

Current chains

Chain A
23S rRNA

Nearby chains

Chain F
50S ribosomal protein L3

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2539 s