IL_7AS8_092

3D structure

PDB id

7AS8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis ribosome quality control complex state B. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUA*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AS8_092 not in the Motif Atlas

Geometric match to IL_4WF9_091

Geometric discrepancy: 0.1883

The information below is about IL_4WF9_091

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.6

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

41

Unit IDs

7AS8|1|A|U|2486
7AS8|1|A|U|2487
7AS8|1|A|A|2488
*
7AS8|1|A|U|2522
7AS8|1|A|G|2523

Current chains

Chain A

23S rRNA

Nearby chains

Chain Q

50S ribosomal protein L16

Chain a

50S ribosomal protein L27