IL_7AS8_093

3D structure

PDB id

7AS8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis ribosome quality control complex state B. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AS8_093 not in the Motif Atlas

Homologous match to IL_4WF9_092

Geometric discrepancy: 0.1101

The information below is about IL_4WF9_092

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_51387.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

20

Unit IDs

7AS8|1|A|A|2488
7AS8|1|A|U|2489
7AS8|1|A|C|2490
*
7AS8|1|A|G|2518
7AS8|1|A|G|2519
7AS8|1|A|U|2520
7AS8|1|A|U|2521
7AS8|1|A|U|2522

Current chains

Chain A

23S rRNA

Nearby chains

Chain Q

50S ribosomal protein L16

Chain a

50S ribosomal protein L27