IL_7AS8_114

3D structure

PDB id

7AS8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis ribosome quality control complex state B. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UCG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AS8_114 not in the Motif Atlas

Geometric match to IL_3RW6_004

Geometric discrepancy: 0.1776

The information below is about IL_3RW6_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

7AS8|1|B|U|78
7AS8|1|B|C|79
7AS8|1|B|G|80
*
7AS8|1|B|C|92
7AS8|1|B|U|93
7AS8|1|B|G|94

Current chains

Chain B

5s rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain Q

50S ribosomal protein L16

Chain d

50S ribosomal protein L30