IL_7ASM_019

3D structure

PDB id

7ASM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 50S after 30 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

7ASM|1|A|G|846, 7ASM|1|A|G|850

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ASM_019 not in the Motif Atlas

Geometric match to IL_4WF9_021

Geometric discrepancy: 0.0789

The information below is about IL_4WF9_021

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_73855.1

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

10

Unit IDs

7ASM|1|A|G|719
7ASM|1|A|A|720
7ASM|1|A|A|721
7ASM|1|A|A|722
7ASM|1|A|C|723
*
7ASM|1|A|G|844
7ASM|1|A|A|845
7ASM|1|A|G|846
7ASM|1|A|A|847
7ASM|1|A|U|848
7ASM|1|A|A|849
7ASM|1|A|G|850
7ASM|1|A|C|851

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain J

50S ribosomal protein L15