IL_7ASM_031

3D structure

PDB id

7ASM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 50S after 30 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

ACGAG*CGAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ASM_031 not in the Motif Atlas

Homologous match to IL_5J7L_274

Geometric discrepancy: 0.572

The information below is about IL_5J7L_274

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

7ASM|1|A|A|920
7ASM|1|A|C|921
7ASM|1|A|G|922
7ASM|1|A|A|923
7ASM|1|A|G|924
*
7ASM|1|A|C|943
7ASM|1|A|G|944
7ASM|1|A|A|945
7ASM|1|A|A|946
7ASM|1|A|U|947

Current chains

Chain A

23S rRNA

Nearby chains

Chain K

50S ribosomal protein L16