IL_7ASM_035

3D structure

PDB id

7ASM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 50S after 30 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

AUA*UU

Length

5 nucleotides

Bulged bases

7ASM|1|A|U|1056

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ASM_035 not in the Motif Atlas

Geometric match to IL_5J7L_279

Geometric discrepancy: 0.2311

The information below is about IL_5J7L_279

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

7ASM|1|A|A|1055
7ASM|1|A|U|1056
7ASM|1|A|A|1057
*
7ASM|1|A|U|1193
7ASM|1|A|U|1194

Current chains

Chain A

23S rRNA

Nearby chains

Chain H

50S ribosomal protein L13

Chain O

50S ribosomal protein L20