IL_7ASM_036

3D structure

PDB id

7ASM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 50S after 30 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

7ASM|1|A|A|1187

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ASM_036 not in the Motif Atlas

Homologous match to IL_7RQB_039

Geometric discrepancy: 0.0702

The information below is about IL_7RQB_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57188.3

Basepair signature

cWW-cSH-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

7ASM|1|A|U|1062
7ASM|1|A|U|1063
7ASM|1|A|A|1064
7ASM|1|A|A|1065
7ASM|1|A|G|1066
7ASM|1|A|U|1067
7ASM|1|A|G|1068
*
7ASM|1|A|C|1184
7ASM|1|A|U|1185
7ASM|1|A|A|1186
7ASM|1|A|A|1187
7ASM|1|A|A|1188

Current chains

Chain A

23S rRNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain G

50S ribosomal protein L6

Chain H

50S ribosomal protein L13