IL_7ASM_065

3D structure

PDB id

7ASM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 50S after 30 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

UGCUAAA*UGAUGUAUA

Length

16 nucleotides

Bulged bases

7ASM|1|A|U|1828, 7ASM|1|A|U|1843, 7ASM|1|A|U|1847

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ASM_065 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.0794

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

7ASM|1|A|U|1825
7ASM|1|A|G|1826
7ASM|1|A|C|1827
7ASM|1|A|U|1828
7ASM|1|A|A|1829
7ASM|1|A|A|1830
7ASM|1|A|A|1831
*
7ASM|1|A|U|1840
7ASM|1|A|G|1841
7ASM|1|A|A|1842
7ASM|1|A|U|1843
7ASM|1|A|G|1844
7ASM|1|A|U|1845
7ASM|1|A|A|1846
7ASM|1|A|U|1847
7ASM|1|A|A|1848

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2