IL_7ASM_069

3D structure

PDB id

7ASM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 50S after 30 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

UUAAG*CGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ASM_069 not in the Motif Atlas

Homologous match to IL_4WF9_073

Geometric discrepancy: 0.2425

The information below is about IL_4WF9_073

Detailed Annotation

UAA/GAN with extra pair

Broad Annotation

No text annotation

Motif group

IL_89021.2

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

6

Unit IDs

7ASM|1|A|U|1878
7ASM|1|A|U|1879
7ASM|1|A|A|1880
7ASM|1|A|A|1881
7ASM|1|A|G|1882
*
7ASM|1|A|C|1914
7ASM|1|A|G|1915
7ASM|1|A|A|1916
7ASM|1|A|A|1917
7ASM|1|A|G|1918

Current chains

Chain A

23S rRNA

Nearby chains