IL_7ASM_092

3D structure

PDB id

7ASM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 50S after 30 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

7ASM|1|A|G|2603, 7ASM|1|A|A|2604

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ASM_092 not in the Motif Atlas

Homologous match to IL_4WF9_095

Geometric discrepancy: 0.089

The information below is about IL_4WF9_095

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

7ASM|1|A|C|2537
7ASM|1|A|U|2538
7ASM|1|A|C|2539
*
7ASM|1|A|G|2601
7ASM|1|A|C|2602
7ASM|1|A|G|2603
7ASM|1|A|A|2604
7ASM|1|A|G|2605

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain Z

50S ribosomal protein L32