IL_7ASP_036

3D structure

PDB id

7ASP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S after 50 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

GAA*UCUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ASP_036 not in the Motif Atlas

Homologous match to IL_4WF9_003

Geometric discrepancy: 0.4401

The information below is about IL_4WF9_003

Detailed Annotation

Minor groove platform with extra cWW

Broad Annotation

Minor groove platform

Motif group

IL_82096.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

7ASP|1|Y|G|42
7ASP|1|Y|A|43
7ASP|1|Y|A|44
*
7ASP|1|Y|U|480
7ASP|1|Y|C|481
7ASP|1|Y|U|482
7ASP|1|Y|C|483

Current chains

Chain Y

23S rRNA

Nearby chains

Chain B

50S ribosomal protein L34