IL_7ASP_039
3D structure
- PDB id
- 7ASP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus 70S after 50 minutes incubation at 37C
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- GAGAACUG*CUUAGUAC
- Length
- 16 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7ASP_039 not in the Motif Atlas
- Geometric match to IL_5TBW_005
- Geometric discrepancy: 0.2084
- The information below is about IL_5TBW_005
- Detailed Annotation
- tSH-tHW-tHH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_35728.2
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
7ASP|1|Y|G|190
7ASP|1|Y|A|191
7ASP|1|Y|G|192
7ASP|1|Y|A|193
7ASP|1|Y|A|194
7ASP|1|Y|C|195
7ASP|1|Y|U|196
7ASP|1|Y|G|197
*
7ASP|1|Y|C|204
7ASP|1|Y|U|205
7ASP|1|Y|U|206
7ASP|1|Y|A|207
7ASP|1|Y|G|208
7ASP|1|Y|U|209
7ASP|1|Y|A|210
7ASP|1|Y|C|211
Current chains
- Chain Y
- 23S rRNA
Nearby chains
- Chain B
- 50S ribosomal protein L34
- Chain J
- 50S ribosomal protein L15
- Chain V
- 50S ribosomal protein L28
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