IL_7ASP_064

3D structure

PDB id

7ASP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S after 50 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

GCG*CAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ASP_064 not in the Motif Atlas

Homologous match to IL_4WF9_042

Geometric discrepancy: 0.185

The information below is about IL_4WF9_042

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

7ASP|1|Y|G|1081
7ASP|1|Y|C|1082
7ASP|1|Y|G|1083
*
7ASP|1|Y|C|1160
7ASP|1|Y|A|1161
7ASP|1|Y|C|1162

Current chains

Chain Y

23S rRNA

Nearby chains

Chain K

50S ribosomal protein L16

Chain T

50S ribosomal protein L25