IL_7ASP_084

3D structure

PDB id

7ASP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S after 50 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

UGCUAAA*UGAUGUAUA

Length

16 nucleotides

Bulged bases

7ASP|1|Y|U|1828, 7ASP|1|Y|U|1843, 7ASP|1|Y|U|1847

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ASP_084 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.1077

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

7ASP|1|Y|U|1825
7ASP|1|Y|G|1826
7ASP|1|Y|C|1827
7ASP|1|Y|U|1828
7ASP|1|Y|A|1829
7ASP|1|Y|A|1830
7ASP|1|Y|A|1831
*
7ASP|1|Y|U|1840
7ASP|1|Y|G|1841
7ASP|1|Y|A|1842
7ASP|1|Y|U|1843
7ASP|1|Y|G|1844
7ASP|1|Y|U|1845
7ASP|1|Y|A|1846
7ASP|1|Y|U|1847
7ASP|1|Y|A|1848

Current chains

Chain Y

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2