IL_7ASP_099

3D structure

PDB id

7ASP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S after 50 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

AUUC*GGCU

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ASP_099 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.2421

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

7ASP|1|Y|A|2123
7ASP|1|Y|U|2124
7ASP|1|Y|U|2125
7ASP|1|Y|C|2126
*
7ASP|1|Y|G|2217
7ASP|1|Y|G|2218
7ASP|1|Y|C|2219
7ASP|1|Y|U|2220

Current chains

Chain Y

23S rRNA

Nearby chains