IL_7ASP_100

3D structure

PDB id

7ASP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S after 50 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

CACA*UGUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ASP_100 not in the Motif Atlas

Geometric match to IL_3NDB_001

Geometric discrepancy: 0.3495

The information below is about IL_3NDB_001

Detailed Annotation

Self complementary

Broad Annotation

Self complementary

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

7ASP|1|Y|C|2129
7ASP|1|Y|A|2130
7ASP|1|Y|C|2131
7ASP|1|Y|A|2132
*
7ASP|1|Y|U|2211
7ASP|1|Y|G|2212
7ASP|1|Y|U|2213
7ASP|1|Y|G|2214

Current chains

Chain Y

23S rRNA

Nearby chains