IL_7ASP_127

3D structure

PDB id

7ASP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S after 50 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

CGGCUAAC*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ASP_127 not in the Motif Atlas

Homologous match to IL_5J7L_024

Geometric discrepancy: 0.5447

The information below is about IL_5J7L_024

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

7ASP|1|X|C|512
7ASP|1|X|G|513
7ASP|1|X|G|514
7ASP|1|X|C|515
7ASP|1|X|U|516
7ASP|1|X|A|517
7ASP|1|X|A|518
7ASP|1|X|C|519
*
7ASP|1|X|G|548
7ASP|1|X|G|549

Current chains

Chain X

16S rRNA

Nearby chains

Chain l

30S ribosomal protein S4

Chain m

30S ribosomal protein S5