IL_7AZS_040

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

7AZS|1|16SA|U|1677

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZS_040 not in the Motif Atlas

Homologous match to IL_4LFB_042

Geometric discrepancy: 0.1114

The information below is about IL_4LFB_042

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

7AZS|1|16SA|G|1676
7AZS|1|16SA|U|1677
7AZS|1|16SA|G|1678
*
7AZS|1|16SA|C|1835
7AZS|1|16SA|C|1836

Current chains

Chain 16SA

16S rRNA

Nearby chains

Chain S14A

30S ribosomal protein S14 type Z