IL_7AZS_077

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

7AZS|1|16SB|A|1053

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZS_077 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1505

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

7AZS|1|16SB|G|1050
7AZS|1|16SB|G|1051
7AZS|1|16SB|A|1052
7AZS|1|16SB|A|1053
7AZS|1|16SB|G|1054
7AZS|1|16SB|A|1055
7AZS|1|16SB|A|1056
7AZS|1|16SB|G|1057
*
7AZS|1|16SB|U|1068
7AZS|1|16SB|G|1069
7AZS|1|16SB|U|1070
7AZS|1|16SB|A|1071
7AZS|1|16SB|A|1072
7AZS|1|16SB|A|1073
7AZS|1|16SB|C|1074

Current chains

Chain 16SB

16S rRNA

Nearby chains

Chain S4B

30S ribosomal protein S4