IL_7AZS_099

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GACAU*AC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZS_099 not in the Motif Atlas

Homologous match to IL_4LFB_039

Geometric discrepancy: 0.192

The information below is about IL_4LFB_039

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_61370.1

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

7AZS|1|16SB|G|1616
7AZS|1|16SB|A|1617
7AZS|1|16SB|C|1618
7AZS|1|16SB|A|1619
7AZS|1|16SB|U|1620
*
7AZS|1|16SB|A|1672
7AZS|1|16SB|C|1673

Current chains

Chain 16SB

16S rRNA

Nearby chains

Chain S14B

30S ribosomal protein S14 type Z

Chain S3B

30S ribosomal protein S3