IL_7AZS_111

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCAC*GGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZS_111 not in the Motif Atlas

Geometric match to IL_5J7L_256

Geometric discrepancy: 0.35

The information below is about IL_5J7L_256

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

7AZS|1|16SB|C|1886
7AZS|1|16SB|C|1887
7AZS|1|16SB|A|1888
7AZS|1|16SB|C|1889
*
7AZS|1|16SB|G|1900
7AZS|1|16SB|G|1901
7AZS|1|16SB|A|1902
7AZS|1|16SB|G|1903

Current chains

Chain 16SB

16S rRNA

Nearby chains

Chain S19B

30S ribosomal protein S19

Chain THXB

30S ribosomal protein Thx