IL_7AZS_121

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AUCA*UUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZS_121 not in the Motif Atlas

Geometric match to IL_5EW4_001

Geometric discrepancy: 0.2802

The information below is about IL_5EW4_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_76776.1

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

7AZS|1|16SB|A|2154
7AZS|1|16SB|U|2155
7AZS|1|16SB|C|2156
7AZS|1|16SB|A|2157
*
7AZS|1|MRNB|U|38
7AZS|1|MRNB|U|39
7AZS|1|MRNB|U|40
7AZS|1|MRNB|U|41

Current chains

Chain 16SB

16S rRNA

Chain MRNB

mRNA

Nearby chains

Chain S11B

30S ribosomal protein S11

Chain S7B

30S ribosomal protein S7