IL_7AZS_125

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGGAG*CGUGGAUC

Length

13 nucleotides

Bulged bases

7AZS|1|23SA|G|99

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZS_125 not in the Motif Atlas

Geometric match to IL_7RQB_004

Geometric discrepancy: 0.0658

The information below is about IL_7RQB_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.2

Basepair signature

cWW-tSS-L-tSH-L-R-R-cWW-L

Number of instances in this motif group

18

Unit IDs

7AZS|1|23SA|G|80
7AZS|1|23SA|G|81
7AZS|1|23SA|G|82
7AZS|1|23SA|A|83
7AZS|1|23SA|G|84
*
7AZS|1|23SA|C|96
7AZS|1|23SA|G|97
7AZS|1|23SA|U|98
7AZS|1|23SA|G|99
7AZS|1|23SA|G|100
7AZS|1|23SA|A|101
7AZS|1|23SA|U|102
7AZS|1|23SA|C|103

Current chains

Chain 23SA

23S rRNA

Nearby chains

Chain L24A

50S ribosomal protein L24

Chain L29A

50S ribosomal protein L29