IL_7AZS_128

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGAGUAG*CGAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZS_128 not in the Motif Atlas

Geometric match to IL_7RQB_007

Geometric discrepancy: 0.0643

The information below is about IL_7RQB_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

7AZS|1|23SA|U|229
7AZS|1|23SA|G|230
7AZS|1|23SA|A|231
7AZS|1|23SA|G|232
7AZS|1|23SA|U|233
7AZS|1|23SA|A|234
7AZS|1|23SA|G|235
*
7AZS|1|23SA|C|243
7AZS|1|23SA|G|244
7AZS|1|23SA|A|245
7AZS|1|23SA|A|246
7AZS|1|23SA|A|247
7AZS|1|23SA|G|248

Current chains

Chain 23SA

23S rRNA

Nearby chains

Chain L15A

50S ribosomal protein L15

Chain L35A

50S ribosomal protein L35