IL_7AZS_138

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

7AZS|1|23SA|G|850, 7AZS|1|23SA|G|854

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZS_138 not in the Motif Atlas

Geometric match to IL_4WF9_021

Geometric discrepancy: 0.0903

The information below is about IL_4WF9_021

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_73855.1

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

10

Unit IDs

7AZS|1|23SA|G|723
7AZS|1|23SA|A|724
7AZS|1|23SA|A|725
7AZS|1|23SA|A|726
7AZS|1|23SA|C|727
*
7AZS|1|23SA|G|848
7AZS|1|23SA|A|849
7AZS|1|23SA|G|850
7AZS|1|23SA|A|851
7AZS|1|23SA|U|852
7AZS|1|23SA|A|853
7AZS|1|23SA|G|854
7AZS|1|23SA|C|855

Current chains

Chain 23SA

23S rRNA

Nearby chains

Chain L15A

50S ribosomal protein L15

Chain L4A

50S ribosomal protein L4