IL_7AZS_157

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUAAGUG*CUUAAG

Length

13 nucleotides

Bulged bases

7AZS|1|23SA|U|1190, 7AZS|1|23SA|A|1192

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZS_157 not in the Motif Atlas

Geometric match to IL_4WF9_039

Geometric discrepancy: 0.0924

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

7AZS|1|23SA|C|1066
7AZS|1|23SA|U|1067
7AZS|1|23SA|A|1068
7AZS|1|23SA|A|1069
7AZS|1|23SA|G|1070
7AZS|1|23SA|U|1071
7AZS|1|23SA|G|1072
*
7AZS|1|23SA|C|1188
7AZS|1|23SA|U|1189
7AZS|1|23SA|U|1190
7AZS|1|23SA|A|1191
7AZS|1|23SA|A|1192
7AZS|1|23SA|G|1193

Current chains

Chain 23SA

23S rRNA

Nearby chains

Chain L13A

50S ribosomal protein L13

Chain L6A

50S ribosomal protein L6