IL_7AZS_162

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGU*AGUG

Length

7 nucleotides

Bulged bases

7AZS|1|23SA|G|1297

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZS_162 not in the Motif Atlas

Geometric match to IL_7RQB_045

Geometric discrepancy: 0.0833

The information below is about IL_7RQB_045

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_52767.4

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

7AZS|1|23SA|C|1244
7AZS|1|23SA|G|1245
7AZS|1|23SA|U|1246
*
7AZS|1|23SA|A|1296
7AZS|1|23SA|G|1297
7AZS|1|23SA|U|1298
7AZS|1|23SA|G|1299

Current chains

Chain 23SA

23S rRNA

Nearby chains

Chain L15A

50S ribosomal protein L15

Chain L20A

50S ribosomal protein L20

Chain L4A

50S ribosomal protein L4