IL_7AZS_187

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGCGAAC*GGAGGUAUA

Length

16 nucleotides

Bulged bases

7AZS|1|23SA|G|1835, 7AZS|1|23SA|G|1850, 7AZS|1|23SA|U|1854

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZS_187 not in the Motif Atlas

Geometric match to IL_7RQB_070

Geometric discrepancy: 0.0662

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

7AZS|1|23SA|U|1832
7AZS|1|23SA|G|1833
7AZS|1|23SA|C|1834
7AZS|1|23SA|G|1835
7AZS|1|23SA|A|1836
7AZS|1|23SA|A|1837
7AZS|1|23SA|C|1838
*
7AZS|1|23SA|G|1847
7AZS|1|23SA|G|1848
7AZS|1|23SA|A|1849
7AZS|1|23SA|G|1850
7AZS|1|23SA|G|1851
7AZS|1|23SA|U|1852
7AZS|1|23SA|A|1853
7AZS|1|23SA|U|1854
7AZS|1|23SA|A|1855

Current chains

Chain 23SA

23S rRNA

Nearby chains

Chain 16SA

Small subunit ribosomal RNA; SSU rRNA

Chain L2A

50S ribosomal protein L2