IL_7AZS_189

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UG*UGAA

Length

6 nucleotides

Bulged bases

7AZS|1|23SA|A|1925

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZS_189 not in the Motif Atlas

Geometric match to IL_5J7L_315

Geometric discrepancy: 0.0902

The information below is about IL_5J7L_315

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_82107.5

Basepair signature

cWW-cWW

Number of instances in this motif group

31

Unit IDs

7AZS|1|23SA|U|1875
7AZS|1|23SA|G|1876
*
7AZS|1|23SA|U|1923
7AZS|1|23SA|G|1924
7AZS|1|23SA|A|1925
7AZS|1|23SA|A|1926

Current chains

Chain 23SA

23S rRNA

Nearby chains

Chain 16SA

Small subunit ribosomal RNA; SSU rRNA

Chain L2A

50S ribosomal protein L2