IL_7AZS_209

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZS_209 not in the Motif Atlas

Geometric match to IL_7RQB_092

Geometric discrepancy: 0.0807

The information below is about IL_7RQB_092

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_27635.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

38

Unit IDs

7AZS|1|23SA|G|2469
7AZS|1|23SA|G|2470
*
7AZS|1|23SA|C|2511
7AZS|1|23SA|A|2512
7AZS|1|23SA|C|2513

Current chains

Chain 23SA

23S rRNA

Nearby chains

Chain L16A

50S ribosomal protein L16

Chain L27A

50S ribosomal protein L27

Chain L3A

50S ribosomal protein L3