IL_7AZS_214

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

7AZS|1|23SA|G|2591, 7AZS|1|23SA|A|2592

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZS_214 not in the Motif Atlas

Geometric match to IL_7RQB_097

Geometric discrepancy: 0.0945

The information below is about IL_7RQB_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_90933.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

11

Unit IDs

7AZS|1|23SA|C|2525
7AZS|1|23SA|U|2526
7AZS|1|23SA|C|2527
*
7AZS|1|23SA|G|2589
7AZS|1|23SA|C|2590
7AZS|1|23SA|G|2591
7AZS|1|23SA|A|2592
7AZS|1|23SA|G|2593

Current chains

Chain 23SA

23S rRNA

Nearby chains

Chain L32A

50S ribosomal protein L32

Chain L3A

50S ribosomal protein L3