IL_7AZS_224

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAUAAC*GGAAGC

Length

12 nucleotides

Bulged bases

7AZS|1|23SA|A|2781

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZS_224 not in the Motif Atlas

Geometric match to IL_7RQB_107

Geometric discrepancy: 0.0588

The information below is about IL_7RQB_107

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.5

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

5

Unit IDs

7AZS|1|23SA|G|2753
7AZS|1|23SA|A|2754
7AZS|1|23SA|U|2755
7AZS|1|23SA|A|2756
7AZS|1|23SA|A|2757
7AZS|1|23SA|C|2758
*
7AZS|1|23SA|G|2778
7AZS|1|23SA|G|2779
7AZS|1|23SA|A|2780
7AZS|1|23SA|A|2781
7AZS|1|23SA|G|2782
7AZS|1|23SA|C|2783

Current chains

Chain 23SA

23S rRNA

Nearby chains

Chain L13A

50S ribosomal protein L13

Chain L6A

50S ribosomal protein L6