IL_7AZS_248

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGUG*CUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZS_248 not in the Motif Atlas

Geometric match to IL_7RQB_022

Geometric discrepancy: 0.0685

The information below is about IL_7RQB_022

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_05564.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

14

Unit IDs

7AZS|1|23SB|G|787
7AZS|1|23SB|G|788
7AZS|1|23SB|U|789
7AZS|1|23SB|G|790
*
7AZS|1|23SB|C|805
7AZS|1|23SB|U|806
7AZS|1|23SB|C|807

Current chains

Chain 23SB

23S rRNA

Nearby chains

Chain L34B

50S ribosomal protein L34