IL_7AZS_256

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCUAG*CAAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZS_256 not in the Motif Atlas

Geometric match to IL_5J7L_274

Geometric discrepancy: 0.3657

The information below is about IL_5J7L_274

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

7AZS|1|23SB|G|924
7AZS|1|23SB|C|925
7AZS|1|23SB|U|926
7AZS|1|23SB|A|927
7AZS|1|23SB|G|928
*
7AZS|1|23SB|C|946
7AZS|1|23SB|A|947
7AZS|1|23SB|A|948
7AZS|1|23SB|A|949
7AZS|1|23SB|C|950

Current chains

Chain 23SB

23S rRNA

Nearby chains

Chain ASIB

Transfer RNA; tRNA

Chain L16B

50S ribosomal protein L16

Chain L25B

50S ribosomal protein L25