IL_7AZS_268

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAUG*UAAG

Length

9 nucleotides

Bulged bases

7AZS|1|23SB|U|1253

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZS_268 not in the Motif Atlas

Geometric match to IL_7RQB_046

Geometric discrepancy: 0.2766

The information below is about IL_7RQB_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68574.2

Basepair signature

cWW-tHH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

7AZS|1|23SB|C|1250
7AZS|1|23SB|G|1251
7AZS|1|23SB|A|1252
7AZS|1|23SB|U|1253
7AZS|1|23SB|G|1254
*
7AZS|1|23SB|U|1289
7AZS|1|23SB|A|1290
7AZS|1|23SB|A|1291
7AZS|1|23SB|G|1292

Current chains

Chain 23SB

23S rRNA

Nearby chains

Chain L15B

50S ribosomal protein L15

Chain L4B

50S ribosomal protein L4