IL_7AZS_286

3D structure

PDB id

7AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAGAAC*GAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AZS_286 not in the Motif Atlas

Geometric match to IL_5J7L_304

Geometric discrepancy: 0.0673

The information below is about IL_5J7L_304

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_12566.4

Basepair signature

cWW-L-tHS-L-cWW-L

Number of instances in this motif group

5

Unit IDs

7AZS|1|23SB|G|1701
7AZS|1|23SB|A|1702
7AZS|1|23SB|G|1703
7AZS|1|23SB|A|1704
7AZS|1|23SB|A|1705
7AZS|1|23SB|C|1706
*
7AZS|1|23SB|G|2029
7AZS|1|23SB|A|2030
7AZS|1|23SB|C|2031

Current chains

Chain 23SB

23S rRNA

Nearby chains

Chain L17B

50S ribosomal protein L17

Chain L3B

50S ribosomal protein L3